Index

_

__contains__() (ptypy.utils.parameters.Param method) __dir__() (ptypy.utils.parameters.Param method) __getitem__() (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) (ptypy.utils.descriptor.Descriptor method)

__setitem__() (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) (ptypy.utils.descriptor.Descriptor method) __str__() (ptypy.utils.descriptor.Descriptor method)

A

abort (ptypy.core.data.PtyScan property) (ptypy.experiment.PtyScan property) abs2() (in module ptypy.utils.math_utils) activate() (ptypy.io.interaction.Client method) (ptypy.io.interaction.Server method) active (ptypy.core.classes.POD property) (ptypy.core.classes.View property) ACTIVE (ptypy.utils.plot_client.PlotClient attribute) add2argparser() (ptypy.utils.descriptor.ArgParseDescriptor method) add_child() (ptypy.utils.descriptor.Descriptor method) add_colorbar() (ptypy.utils.plot_utils.PtyAxis method) add_records() (ptypy.utils.misc.Table method)

all_subclasses() (in module ptypy.utils.misc) allreduce() (in module ptypy.utils.parallel) (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) aperture() (in module ptypy.core.illumination) ArgParseDescriptor (class in ptypy.utils.descriptor) asParam() (in module ptypy.utils.parameters) assign() (ptypy.utils.parallel.LoadManager method) auto() (ptypy.core.data.PtyScan method) (ptypy.experiment.PtyScan method) auto_file() (ptypy.core.paths.Paths method) avail() (ptypy.io.interaction.Client method)

B

barrier() (in module ptypy.utils.parallel) Base (class in ptypy.core.classes) Base3dBraggEngine (class in ptypy.engines.base) BaseEngine (class in ptypy.engines.base) basic_fourier_update() (in module ptypy.engines.utils) basic_fourier_update_LEGACY() (in module ptypy.engines.utils) BasicFarfieldPropagator (class in ptypy.core.geometry) BasicNearfieldPropagator (class in ptypy.core.geometry) bcast() (in module ptypy.utils.parallel)

bcast_dict() (in module ptypy.utils.parallel) BlockFull (class in ptypy.core.manager) BlockOPRModel (class in ptypy.core.manager) BlockScanModel (class in ptypy.core.manager) BlockVanilla (class in ptypy.core.manager) Bragg3dModel (class in ptypy.core.manager) bw (ptypy.core.classes.POD property) bw() (ptypy.core.geometry.BasicFarfieldPropagator method) (ptypy.core.geometry.BasicNearfieldPropagator method) by_name() (in module ptypy.engines)

C

c_gf() (in module ptypy.utils.math_utils) c_zoom() (in module ptypy.utils.array_utils) cabs2() (in module ptypy.utils.math_utils) calc_mem_usage() (ptypy.core.classes.Base method) Cdot() (in module ptypy.engines.utils) center (ptypy.core.classes.Storage property) check() (ptypy.core.data.MoonFlowerScan method) (ptypy.core.data.PtydScan method) (ptypy.core.data.PtyScan method) (ptypy.experiment.FliSpecScanMultexp method) (ptypy.experiment.ID16Anfp.ID16AScan method) (ptypy.experiment.ID16AScan method) (ptypy.experiment.MoonFlowerScan method) (ptypy.experiment.optiklabor.FliSpecScanMultexp method) (ptypy.experiment.PtydScan method) (ptypy.experiment.PtyScan method) (ptypy.utils.descriptor.EvalDescriptor method) children (ptypy.utils.descriptor.Descriptor attribute) choices (ptypy.utils.descriptor.ArgParseDescriptor property) clean_path() (in module ptypy.utils.misc) clear() (ptypy.core.classes.Container method) Client (class in ptypy.io.interaction) Cnorm2() (in module ptypy.engines.utils) CODES (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute) COMPATIBLE_MODELS (ptypy.engines.base.BaseEngine attribute)

complex2hsv() (in module ptypy.utils.plot_utils) complex2rgb() (in module ptypy.utils.plot_utils) complex_overload() (in module ptypy.utils.misc) compute_scan_mapping_and_trajectory() (ptypy.experiment.hdf5_loader.Hdf5Loader method) (ptypy.experiment.Hdf5Loader method) Container (class in ptypy.core.classes) containers (ptypy.core.ptycho.Ptycho property) conv() (in module ptypy.simulations.detector) coord (ptypy.core.classes.View property) copies (ptypy.core.classes.Container property) copy() (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) (ptypy.core.classes.View method) (ptypy.utils.parameters.Param method) copy_state() (ptypy.core.ptycho.Ptycho method) correct() (ptypy.core.data.PtyScan method) (ptypy.experiment.FliSpecScanMultexp method) (ptypy.experiment.ID16Anfp.ID16AScan method) (ptypy.experiment.ID16AScan method) (ptypy.experiment.optiklabor.FliSpecScanMultexp method) (ptypy.experiment.PtyScan method) create_plot_from_tile_list() (ptypy.utils.plot_client.MPLplotter static method) create_template() (ptypy.utils.descriptor.EvalDescriptor method) crop_pad() (in module ptypy.utils.array_utils) crop_pad_axis() (in module ptypy.utils.array_utils) crop_pad_symmetric_2d() (in module ptypy.utils.array_utils) cxro_iref() (in module ptypy.utils.scripts)

D

data (ptypy.core.classes.Storage attribute) (ptypy.core.classes.View property) DATA (ptypy.utils.plot_client.PlotClient attribute) data_available (ptypy.core.manager.ModelManager property) dcoord (ptypy.core.classes.View property) DEFAULT (in module ptypy.core.paths) (ptypy.core.data.MoonFlowerScan attribute) (ptypy.core.data.PtydScan attribute) (ptypy.core.data.PtyScan attribute) (ptypy.core.geometry.Geo attribute) (ptypy.core.manager.BlockFull attribute) (ptypy.core.manager.BlockOPRModel attribute) (ptypy.core.manager.BlockScanModel attribute) (ptypy.core.manager.BlockVanilla attribute) (ptypy.core.manager.Bragg3dModel attribute) (ptypy.core.manager.Full attribute) (ptypy.core.manager.OPRModel attribute) (ptypy.core.manager.ScanModel attribute) (ptypy.core.manager.Vanilla attribute) (ptypy.core.paths.Paths attribute) (ptypy.core.ptycho.Ptycho attribute) (ptypy.engines.ML.ML attribute) (ptypy.engines.projectional.DM attribute) (ptypy.engines.projectional.RAAR attribute) (ptypy.engines.stochastic.EPIE attribute) (ptypy.engines.stochastic.SDR attribute) (ptypy.experiment.FliSpecScanMultexp attribute) (ptypy.experiment.hdf5_loader.Hdf5Loader attribute) (ptypy.experiment.hdf5_loader.Hdf5LoaderFast attribute) (ptypy.experiment.Hdf5Loader attribute) (ptypy.experiment.Hdf5LoaderFast attribute) (ptypy.experiment.ID16Anfp.ID16AScan attribute) (ptypy.experiment.ID16AScan attribute) (ptypy.experiment.MoonFlowerScan attribute) (ptypy.experiment.optiklabor.FliSpecScanMultexp attribute) (ptypy.experiment.PtydScan attribute) (ptypy.experiment.PtyScan attribute) (ptypy.experiment.QuickScan attribute) (ptypy.experiment.SimScan attribute) (ptypy.io.interaction.Client attribute) (ptypy.io.interaction.Server attribute) (ptypy.simulations.simscan.SimScan attribute)

default (ptypy.utils.descriptor.ArgParseDescriptor property) (ptypy.utils.descriptor.EvalDescriptor property) DEFAULT (ptypy.utils.plot_client.MPLClient attribute) (ptypy.utils.plot_client.MPLplotter attribute) DEFAULT_ACCESSRULE (ptypy.core.classes.View attribute) DEFAULT_VIEWS (ptypy.core.classes.POD attribute) delete_copy() (ptypy.core.classes.Container method) delxb() (in module ptypy.utils.math_utils) delxc() (in module ptypy.utils.math_utils) delxf() (in module ptypy.utils.math_utils) descendants (ptypy.utils.descriptor.Descriptor property) Descriptor (class in ptypy.utils.descriptor) Detector (class in ptypy.simulations.detector) dhigh (ptypy.core.classes.View property) diff (ptypy.core.classes.POD property) disconnect() (ptypy.utils.plot_client.PlotClient method) distance (ptypy.core.geometry.Geo property) diversify() (in module ptypy.utils.scripts) dlayer (ptypy.core.classes.View property) dlow (ptypy.core.classes.View property) DM (class in ptypy.engines.projectional) do() (ptypy.io.interaction.Client method) doc (ptypy.utils.descriptor.EvalDescriptor property) downsample (ptypy.core.classes.POD property) downsample() (ptypy.core.geometry.Geo method) draw() (ptypy.utils.plot_client.MPLplotter method) dtype (ptypy.core.classes.Container property) (ptypy.core.classes.Storage property) dynamic_load() (in module ptypy.engines.utils)

E

edfread() (in module ptypy.io.edfIO) electron_wavelength() (in module ptypy.utils.misc) ellipsis() (in module ptypy.utils.array_utils) end_of_scan (ptypy.core.data.PtyScan property) (ptypy.core.manager.ModelManager property) (ptypy.experiment.PtyScan property) energy (ptypy.core.geometry.Geo property) engine (built-in variable) engine.DM (built-in variable) engine.DM.alpha (built-in variable) engine.DM.clip_object (built-in variable) engine.DM.compute_log_likelihood (built-in variable) engine.DM.fourier_power_bound (built-in variable) engine.DM.fourier_relax_factor (built-in variable) engine.DM.name (built-in variable) engine.DM.numiter (built-in variable) engine.DM.numiter_contiguous (built-in variable) engine.DM.obj_smooth_std (built-in variable) engine.DM.object_inertia (built-in variable) engine.DM.overlap_converge_factor (built-in variable) engine.DM.overlap_max_iterations (built-in variable) engine.DM.position_refinement (built-in variable) engine.DM.position_refinement.amplitude (built-in variable) engine.DM.position_refinement.amplitude_decay (built-in variable) engine.DM.position_refinement.interval (built-in variable) engine.DM.position_refinement.max_shift (built-in variable) engine.DM.position_refinement.method (built-in variable) engine.DM.position_refinement.metric (built-in variable) engine.DM.position_refinement.nshifts (built-in variable) engine.DM.position_refinement.record (built-in variable) engine.DM.position_refinement.start (built-in variable) engine.DM.position_refinement.stop (built-in variable) engine.DM.probe_center_tol (built-in variable) engine.DM.probe_fourier_support (built-in variable) engine.DM.probe_inertia (built-in variable) engine.DM.probe_support (built-in variable) engine.DM.probe_update_start (built-in variable) engine.DM.record_local_error (built-in variable) engine.DM.subpix (built-in variable) engine.DM.subpix_start (built-in variable) engine.DM.update_object_first (built-in variable) engine.DM_3dBragg (built-in variable) engine.DM_3dBragg.alpha (built-in variable) engine.DM_3dBragg.clip_object (built-in variable) engine.DM_3dBragg.compute_log_likelihood (built-in variable) engine.DM_3dBragg.fourier_power_bound (built-in variable) engine.DM_3dBragg.fourier_relax_factor (built-in variable) engine.DM_3dBragg.name (built-in variable) engine.DM_3dBragg.numiter (built-in variable) engine.DM_3dBragg.numiter_contiguous (built-in variable) engine.DM_3dBragg.obj_smooth_std (built-in variable) engine.DM_3dBragg.object_inertia (built-in variable) engine.DM_3dBragg.overlap_converge_factor (built-in variable) engine.DM_3dBragg.overlap_max_iterations (built-in variable) engine.DM_3dBragg.position_refinement (built-in variable) engine.DM_3dBragg.position_refinement.amplitude (built-in variable) engine.DM_3dBragg.position_refinement.amplitude_decay (built-in variable) engine.DM_3dBragg.position_refinement.interval (built-in variable) engine.DM_3dBragg.position_refinement.max_shift (built-in variable) engine.DM_3dBragg.position_refinement.method (built-in variable) engine.DM_3dBragg.position_refinement.metric (built-in variable) engine.DM_3dBragg.position_refinement.nshifts (built-in variable) engine.DM_3dBragg.position_refinement.record (built-in variable) engine.DM_3dBragg.position_refinement.start (built-in variable) engine.DM_3dBragg.position_refinement.stop (built-in variable) engine.DM_3dBragg.probe_center_tol (built-in variable) engine.DM_3dBragg.probe_fourier_support (built-in variable) engine.DM_3dBragg.probe_inertia (built-in variable) engine.DM_3dBragg.probe_support (built-in variable) engine.DM_3dBragg.probe_update_start (built-in variable) engine.DM_3dBragg.record_local_error (built-in variable) engine.DM_3dBragg.sample_support (built-in variable) engine.DM_3dBragg.sample_support.coefficient (built-in variable) engine.DM_3dBragg.sample_support.shrinkwrap (built-in variable) engine.DM_3dBragg.sample_support.shrinkwrap.cutoff (built-in variable) engine.DM_3dBragg.sample_support.shrinkwrap.monotonic (built-in variable) engine.DM_3dBragg.sample_support.shrinkwrap.plot (built-in variable) engine.DM_3dBragg.sample_support.shrinkwrap.smooth (built-in variable) engine.DM_3dBragg.sample_support.shrinkwrap.start (built-in variable) engine.DM_3dBragg.sample_support.size (built-in variable) engine.DM_3dBragg.sample_support.type (built-in variable) engine.DM_3dBragg.subpix (built-in variable) engine.DM_3dBragg.subpix_start (built-in variable) engine.DM_3dBragg.update_object_first (built-in variable) engine.EPIE (built-in variable) engine.EPIE.alpha (built-in variable) engine.EPIE.beta (built-in variable) engine.EPIE.compute_log_likelihood (built-in variable) engine.EPIE.name (built-in variable) engine.EPIE.numiter (built-in variable) engine.EPIE.numiter_contiguous (built-in variable) engine.EPIE.object_norm_is_global (built-in variable) engine.EPIE.position_refinement (built-in variable) engine.EPIE.position_refinement.amplitude (built-in variable) engine.EPIE.position_refinement.amplitude_decay (built-in variable) engine.EPIE.position_refinement.interval (built-in variable) engine.EPIE.position_refinement.max_shift (built-in variable) engine.EPIE.position_refinement.method (built-in variable) engine.EPIE.position_refinement.metric (built-in variable) engine.EPIE.position_refinement.nshifts (built-in variable) engine.EPIE.position_refinement.record (built-in variable) engine.EPIE.position_refinement.start (built-in variable) engine.EPIE.position_refinement.stop (built-in variable) engine.EPIE.probe_center_tol (built-in variable) engine.EPIE.probe_fourier_support (built-in variable) engine.EPIE.probe_support (built-in variable) engine.EPIE.probe_update_start (built-in variable) engine.EPIE.record_local_error (built-in variable)

engine.ML (built-in variable) engine.ML.floating_intensities (built-in variable) engine.ML.intensity_renormalization (built-in variable) engine.ML.ML_type (built-in variable) engine.ML.name (built-in variable) engine.ML.numiter (built-in variable) engine.ML.numiter_contiguous (built-in variable) engine.ML.poly_line_coeffs (built-in variable) engine.ML.position_refinement (built-in variable) engine.ML.position_refinement.amplitude (built-in variable) engine.ML.position_refinement.amplitude_decay (built-in variable) engine.ML.position_refinement.interval (built-in variable) engine.ML.position_refinement.max_shift (built-in variable) engine.ML.position_refinement.method (built-in variable) engine.ML.position_refinement.metric (built-in variable) engine.ML.position_refinement.nshifts (built-in variable) engine.ML.position_refinement.record (built-in variable) engine.ML.position_refinement.start (built-in variable) engine.ML.position_refinement.stop (built-in variable) engine.ML.probe_fourier_support (built-in variable) engine.ML.probe_support (built-in variable) engine.ML.probe_update_start (built-in variable) engine.ML.record_local_error (built-in variable) engine.ML.reg_del2 (built-in variable) engine.ML.reg_del2_amplitude (built-in variable) engine.ML.scale_precond (built-in variable) engine.ML.scale_probe_object (built-in variable) engine.ML.smooth_gradient (built-in variable) engine.ML.smooth_gradient_decay (built-in variable) engine.RAAR (built-in variable) engine.RAAR.beta (built-in variable) engine.RAAR.clip_object (built-in variable) engine.RAAR.compute_log_likelihood (built-in variable) engine.RAAR.fourier_power_bound (built-in variable) engine.RAAR.fourier_relax_factor (built-in variable) engine.RAAR.name (built-in variable) engine.RAAR.numiter (built-in variable) engine.RAAR.numiter_contiguous (built-in variable) engine.RAAR.obj_smooth_std (built-in variable) engine.RAAR.object_inertia (built-in variable) engine.RAAR.overlap_converge_factor (built-in variable) engine.RAAR.overlap_max_iterations (built-in variable) engine.RAAR.position_refinement (built-in variable) engine.RAAR.position_refinement.amplitude (built-in variable) engine.RAAR.position_refinement.amplitude_decay (built-in variable) engine.RAAR.position_refinement.interval (built-in variable) engine.RAAR.position_refinement.max_shift (built-in variable) engine.RAAR.position_refinement.method (built-in variable) engine.RAAR.position_refinement.metric (built-in variable) engine.RAAR.position_refinement.nshifts (built-in variable) engine.RAAR.position_refinement.record (built-in variable) engine.RAAR.position_refinement.start (built-in variable) engine.RAAR.position_refinement.stop (built-in variable) engine.RAAR.probe_center_tol (built-in variable) engine.RAAR.probe_fourier_support (built-in variable) engine.RAAR.probe_inertia (built-in variable) engine.RAAR.probe_support (built-in variable) engine.RAAR.probe_update_start (built-in variable) engine.RAAR.record_local_error (built-in variable) engine.RAAR.subpix (built-in variable) engine.RAAR.subpix_start (built-in variable) engine.RAAR.update_object_first (built-in variable) engine.SDR (built-in variable) engine.SDR.beta_object (built-in variable) engine.SDR.beta_probe (built-in variable) engine.SDR.compute_log_likelihood (built-in variable) engine.SDR.name (built-in variable) engine.SDR.numiter (built-in variable) engine.SDR.numiter_contiguous (built-in variable) engine.SDR.position_refinement (built-in variable) engine.SDR.position_refinement.amplitude (built-in variable) engine.SDR.position_refinement.amplitude_decay (built-in variable) engine.SDR.position_refinement.interval (built-in variable) engine.SDR.position_refinement.max_shift (built-in variable) engine.SDR.position_refinement.method (built-in variable) engine.SDR.position_refinement.metric (built-in variable) engine.SDR.position_refinement.nshifts (built-in variable) engine.SDR.position_refinement.record (built-in variable) engine.SDR.position_refinement.start (built-in variable) engine.SDR.position_refinement.stop (built-in variable) engine.SDR.probe_center_tol (built-in variable) engine.SDR.probe_fourier_support (built-in variable) engine.SDR.probe_support (built-in variable) engine.SDR.probe_update_start (built-in variable) engine.SDR.record_local_error (built-in variable) engine.SDR.sigma (built-in variable) engine.SDR.tau (built-in variable) engine_finalize() (ptypy.engines.base.BaseEngine method) (ptypy.engines.base.PositionCorrectionEngine method) (ptypy.engines.ML.ML method) engine_initialize() (ptypy.engines.base.BaseEngine method) (ptypy.engines.base.PositionCorrectionEngine method) (ptypy.engines.ML.ML method) engine_iterate() (ptypy.engines.base.BaseEngine method) (ptypy.engines.ML.ML method) engine_prepare() (ptypy.engines.base.BaseEngine method) (ptypy.engines.ML.ML method) EOS (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute) EPIE (class in ptypy.engines.stochastic) error (ptypy.core.classes.View attribute) eval() (ptypy.utils.descriptor.ArgParseDescriptor method) EvalDescriptor (class in ptypy.utils.descriptor) exit (ptypy.core.classes.POD property) exp_positions() (in module ptypy.simulations.ptysim_utils) expect2() (in module ptypy.utils.misc) expect3() (in module ptypy.utils.misc) expectN() (in module ptypy.utils.misc)

F

figure_from_ptycho() (in module ptypy.utils.plot_client) figure_from_ptyr() (in module ptypy.utils.plot_client) fill() (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) fill2D() (in module ptypy.simulations.detector) fill_value (ptypy.core.classes.Storage attribute) filter() (ptypy.simulations.detector.Detector method) finalize() (ptypy.core.ptycho.Ptycho method) (ptypy.engines.base.BaseEngine method) FliSpecScanMultexp (class in ptypy.experiment) (class in ptypy.experiment.optiklabor) flower_obj() (in module ptypy.resources)

flush() (ptypy.io.interaction.Client method) formatted_report() (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) frames_accessible (ptypy.core.data.PtyScan property) (ptypy.experiment.PtyScan property) franzmap() (in module ptypy.utils.plot_utils) from_h5() (in module ptypy.core.save_load) from_pars() (in module ptypy.core.xy) from_string() (ptypy.utils.descriptor.Descriptor method) Full (class in ptypy.core.manager) fw (ptypy.core.classes.POD property) fw() (ptypy.core.geometry.BasicFarfieldPropagator method) (ptypy.core.geometry.BasicNearfieldPropagator method)

G

gather_dict() (in module ptypy.utils.parallel) gather_list() (in module ptypy.utils.parallel) gauss_fwhm() (in module ptypy.utils.math_utils) gaussian() (in module ptypy.utils.math_utils) gaussian2D() (in module ptypy.utils.math_utils) Geo (class in ptypy.core.geometry) geometry (ptypy.core.classes.POD attribute) get() (ptypy.io.interaction.Client method) (ptypy.utils.descriptor.Descriptor method) get_corrected_intensities() (ptypy.experiment.hdf5_loader.Hdf5Loader method) (ptypy.experiment.hdf5_loader.Hdf5LoaderFast method) (ptypy.experiment.Hdf5Loader method) (ptypy.experiment.Hdf5LoaderFast method)

get_data() (ptypy.utils.plot_client.PlotClient method) get_data_chunk() (ptypy.core.data.PtyScan method) (ptypy.experiment.PtyScan method) get_now() (ptypy.io.interaction.Client method) get_path() (ptypy.core.paths.Paths method) get_view_coverage() (ptypy.core.classes.Storage method) gf() (in module ptypy.utils.math_utils) gf_2d() (in module ptypy.utils.math_utils) grids() (in module ptypy.utils.array_utils) (ptypy.core.classes.Storage method)

H

h5append() (in module ptypy.io.h5rw) h5info() (in module ptypy.io.h5rw) h5read() (in module ptypy.io.h5rw) h5write() (in module ptypy.io.h5rw) Hdf5Loader (class in ptypy.experiment) (class in ptypy.experiment.hdf5_loader)

Hdf5LoaderFast (class in ptypy.experiment) (class in ptypy.experiment.hdf5_loader) hdr_image() (in module ptypy.utils.scripts) help (ptypy.utils.descriptor.ArgParseDescriptor property) hsv2complex() (in module ptypy.utils.plot_utils) hsv2rgb() (in module ptypy.utils.plot_utils)

I

ID (ptypy.core.classes.Base attribute) (ptypy.core.classes.Container attribute) (ptypy.core.classes.POD attribute) (ptypy.core.classes.Storage attribute) (ptypy.core.classes.View attribute) (ptypy.core.geometry.Geo attribute) (ptypy.core.ptycho.Ptycho attribute) ID16AScan (class in ptypy.experiment) (class in ptypy.experiment.ID16Anfp) image_read() (in module ptypy.io.image_read) imload() (in module ptypy.utils.plot_utils) imread() (in module ptypy.io.imageIO) imsave() (in module ptypy.utils.plot_utils) info (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute) info() (ptypy.core.classes.Container method) init_communication() (ptypy.core.ptycho.Ptycho method) init_data() (ptypy.core.ptycho.Ptycho method) init_engine() (ptypy.core.ptycho.Ptycho method) init_storage() (in module ptypy.core.illumination) (in module ptypy.core.sample) init_structures() (ptypy.core.ptycho.Ptycho method) initialize() (ptypy.core.data.PtyScan method) (ptypy.engines.base.BaseEngine method) (ptypy.experiment.PtyScan method)

insert_records() (ptypy.utils.misc.Table method) io (built-in variable) io.interaction (built-in variable) io.interaction.client (built-in variable) io.interaction.client.address (built-in variable) io.interaction.client.connection_timeout (built-in variable) io.interaction.client.pinginterval (built-in variable) io.interaction.client.poll_timeout (built-in variable) io.interaction.client.port (built-in variable) io.interaction.server (built-in variable) io.interaction.server.active (built-in variable) io.interaction.server.address (built-in variable) io.interaction.server.connections (built-in variable) io.interaction.server.pinginterval (built-in variable) io.interaction.server.pingtimeout (built-in variable) io.interaction.server.poll_timeout (built-in variable) io.interaction.server.port (built-in variable) IPythonKernelThread (class in ptypy.debug.ipython_kernel) is_child (ptypy.utils.descriptor.Descriptor property) is_evaluable (ptypy.utils.descriptor.EvalDescriptor property) is_symlink (ptypy.utils.descriptor.EvalDescriptor property) is_target (ptypy.utils.descriptor.EvalDescriptor property) isstr() (in module ptypy.utils.misc) iterate() (ptypy.engines.base.BaseEngine method)

J

jread() (in module ptypy.io.json_rw)

jwrite() (in module ptypy.io.json_rw)

K

keV2m() (in module ptypy.utils.misc)

keV2nm() (in module ptypy.utils.misc)

L

lam (ptypy.core.geometry.Geo property) layer (ptypy.core.classes.View property) limits (ptypy.utils.descriptor.EvalDescriptor property) link() (in module ptypy.core.save_load) load (ptypy.utils.parallel.LoadManager attribute) load() (ptypy.core.data.MoonFlowerScan method) (ptypy.core.data.PtydScan method) (ptypy.core.data.PtyScan method) (ptypy.experiment.FliSpecScanMultexp method) (ptypy.experiment.ID16Anfp.ID16AScan method) (ptypy.experiment.ID16AScan method) (ptypy.experiment.MoonFlowerScan method) (ptypy.experiment.optiklabor.FliSpecScanMultexp method) (ptypy.experiment.PtydScan method) (ptypy.experiment.PtyScan method) (ptypy.experiment.QuickScan method) (ptypy.experiment.SimScan method) (ptypy.simulations.simscan.SimScan method) load_all() (in module ptypy) load_all_ptyscan_modules() (in module ptypy) load_common() (ptypy.core.data.PtyScan method) (ptypy.experiment.FliSpecScanMultexp method) (ptypy.experiment.ID16Anfp.ID16AScan method) (ptypy.experiment.ID16AScan method) (ptypy.experiment.optiklabor.FliSpecScanMultexp method) (ptypy.experiment.PtyScan method) load_conf_parser() (ptypy.utils.descriptor.Descriptor method) load_csv() (ptypy.utils.descriptor.Descriptor method) load_from_ptyr() (in module ptypy.utils.scripts) load_gpu_engines() (in module ptypy) load_json() (ptypy.utils.descriptor.Descriptor method) load_mapped_and_arbitrary_scan() (ptypy.experiment.hdf5_loader.Hdf5Loader method) (ptypy.experiment.hdf5_loader.Hdf5LoaderFast method) (ptypy.experiment.Hdf5Loader method) (ptypy.experiment.Hdf5LoaderFast method)

load_mapped_and_raster_scan() (ptypy.experiment.hdf5_loader.Hdf5Loader method) (ptypy.experiment.hdf5_loader.Hdf5LoaderFast method) (ptypy.experiment.Hdf5Loader method) (ptypy.experiment.Hdf5LoaderFast method) load_multiprocessing() (ptypy.experiment.hdf5_loader.Hdf5LoaderFast method) (ptypy.experiment.Hdf5LoaderFast method) load_positions() (ptypy.core.data.MoonFlowerScan method) (ptypy.core.data.PtydScan method) (ptypy.core.data.PtyScan method) (ptypy.experiment.ID16Anfp.ID16AScan method) (ptypy.experiment.ID16AScan method) (ptypy.experiment.MoonFlowerScan method) (ptypy.experiment.PtydScan method) (ptypy.experiment.PtyScan method) (ptypy.experiment.QuickScan method) load_ptyscan_module() (in module ptypy) load_run() (ptypy.core.ptycho.Ptycho class method) load_unmapped_raster_scan() (ptypy.experiment.hdf5_loader.Hdf5Loader method) (ptypy.experiment.hdf5_loader.Hdf5LoaderFast method) (ptypy.experiment.Hdf5Loader method) (ptypy.experiment.Hdf5LoaderFast method) load_weight() (ptypy.core.data.MoonFlowerScan method) (ptypy.core.data.PtydScan method) (ptypy.core.data.PtyScan method) (ptypy.experiment.ID16Anfp.ID16AScan method) (ptypy.experiment.ID16AScan method) (ptypy.experiment.MoonFlowerScan method) (ptypy.experiment.PtydScan method) (ptypy.experiment.PtyScan method) (ptypy.experiment.QuickScan method) LoadManager (class in ptypy.utils.parallel) log() (in module ptypy.utils.verbose) log_likelihood() (in module ptypy.engines.utils) loop_plot() (ptypy.utils.plot_client.MPLClient method) lz (ptypy.core.geometry.Geo property)

M

m2keV() (in module ptypy.utils.misc) make_default() (ptypy.utils.descriptor.EvalDescriptor method) make_doc_rst() (ptypy.utils.descriptor.EvalDescriptor method) make_ID_pool() (ptypy.io.interaction.Server method) makePtyScan() (ptypy.core.manager.ScanModel class method) makeScanPlugin() (in module ptypy.experiment.plugin) manipulate_ptycho() (ptypy.experiment.SimScan method) (ptypy.simulations.simscan.SimScan method) mask (ptypy.core.classes.POD property) mass_center() (in module ptypy.utils.scripts) METAKEYS (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute) min_frames (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute) mirror() (in module ptypy.utils.array_utils) ML (class in ptypy.engines.ML) ModelManager (class in ptypy.core.manager) modify_add() (ptypy.utils.misc.Table method) module ptypy ptypy.core ptypy.core.classes ptypy.core.data ptypy.core.geometry ptypy.core.illumination ptypy.core.manager ptypy.core.paths ptypy.core.ptycho ptypy.core.sample ptypy.core.save_load ptypy.core.xy ptypy.debug ptypy.debug.embedded_shell ptypy.debug.ipython_kernel ptypy.engines ptypy.engines.base ptypy.engines.ML ptypy.engines.projectional ptypy.engines.stochastic ptypy.engines.utils ptypy.experiment ptypy.experiment.hdf5_loader ptypy.experiment.ID16Anfp ptypy.experiment.optiklabor ptypy.experiment.plugin ptypy.experiment.spec ptypy.io ptypy.io.edfIO ptypy.io.h5rw ptypy.io.image_read ptypy.io.imageIO ptypy.io.interaction ptypy.io.json_rw ptypy.io.rawIO ptypy.resources ptypy.simulations ptypy.simulations.detector ptypy.simulations.ptysim_utils ptypy.simulations.simscan ptypy.utils ptypy.utils.array_utils ptypy.utils.descriptor ptypy.utils.math_utils ptypy.utils.misc ptypy.utils.parallel ptypy.utils.parameters ptypy.utils.plot_client ptypy.utils.plot_utils ptypy.utils.scripts ptypy.utils.verbose

moon_pr() (in module ptypy.resources) MoonFlowerScan (class in ptypy.core.data) (class in ptypy.experiment) MPInoise2d() (in module ptypy.utils.parallel) MPIrand_normal() (in module ptypy.utils.parallel) MPIrand_uniform() (in module ptypy.utils.parallel) MPLClient (class in ptypy.utils.plot_client) MPLplotter (class in ptypy.utils.plot_client)

N

name (ptypy.utils.descriptor.Descriptor attribute) nbytes (ptypy.core.classes.Container property) ndim (ptypy.core.classes.Container attribute) (ptypy.core.classes.Storage property) (ptypy.core.classes.View property) new_child() (ptypy.utils.descriptor.Descriptor method) new_data() (ptypy.core.manager.BlockScanModel method) (ptypy.core.manager.ModelManager method) (ptypy.core.manager.ScanModel method) new_fields() (ptypy.utils.misc.Table method) new_storage() (ptypy.core.classes.Container method) new_table() (ptypy.utils.misc.Table method)

newdata() (ptypy.io.interaction.Client method) nm2keV() (in module ptypy.utils.misc) norm() (in module ptypy.utils.math_utils) norm2() (in module ptypy.utils.math_utils) num_frames (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute) numID (ptypy.core.classes.Base attribute) (ptypy.core.classes.Container attribute) (ptypy.core.classes.POD attribute) (ptypy.core.classes.Storage attribute) (ptypy.core.classes.View attribute) (ptypy.core.geometry.Geo attribute) (ptypy.core.ptycho.Ptycho attribute)

O

object (ptypy.core.classes.POD property) OPRModel (class in ptypy.core.manager) option_keys (ptypy.utils.descriptor.Descriptor property) options (ptypy.utils.descriptor.Descriptor attribute) OPTIONS_DEF (ptypy.utils.descriptor.ArgParseDescriptor attribute) (ptypy.utils.descriptor.Descriptor attribute) (ptypy.utils.descriptor.EvalDescriptor attribute) origin (ptypy.core.classes.Storage property)

ortho() (in module ptypy.utils.math_utils) owner (ptypy.core.classes.Base attribute) (ptypy.core.classes.Container attribute) (ptypy.core.classes.POD attribute) (ptypy.core.classes.Storage attribute) (ptypy.core.classes.View attribute) (ptypy.core.geometry.Geo attribute) (ptypy.core.ptycho.Ptycho attribute)

P

pad_lr() (in module ptypy.utils.array_utils) Param (class in ptypy.utils.parameters) param_from_json() (in module ptypy.utils.parameters) param_from_yaml() (in module ptypy.utils.parameters) parent (ptypy.utils.descriptor.Descriptor attribute) parse() (ptypy.experiment.spec.SpecInfo method) parse_doc() (ptypy.utils.descriptor.EvalDescriptor method) path (ptypy.utils.descriptor.Descriptor property) Paths (class in ptypy.core.paths) pause() (in module ptypy.utils.plot_utils) pcoord (ptypy.core.classes.View property) phase_from_dpc() (in module ptypy.utils.scripts) plot_all() (ptypy.utils.plot_client.MPLplotter method) plot_error() (ptypy.utils.plot_client.MPLplotter method) plot_file() (ptypy.core.paths.Paths method) plot_overview() (ptypy.core.ptycho.Ptycho method) plot_storage() (in module ptypy.utils.plot_utils) (ptypy.utils.plot_client.MPLplotter method) PlotClient (class in ptypy.utils.plot_client) png2mpg() (in module ptypy.utils.scripts) POD (class in ptypy.core.classes) pod (ptypy.core.classes.View property) pods (ptypy.core.classes.View property) (ptypy.core.ptycho.Ptycho property) poll() (ptypy.io.interaction.Client method) position_update() (ptypy.engines.base.PositionCorrectionEngine method) PositionCorrectionEngine (class in ptypy.engines.base) POSREF_ENGINES (ptypy.engines.base.PositionCorrectionEngine attribute) post_initialize() (ptypy.core.data.PtyScan method) (ptypy.experiment.PtyScan method) pr_view (ptypy.core.classes.POD attribute) prepare() (ptypy.engines.base.Base3dBraggEngine method) (ptypy.engines.base.BaseEngine method) print_stats() (ptypy.core.ptycho.Ptycho method) probe (ptypy.core.classes.POD property) process_requests() (ptypy.io.interaction.Server method) projection_update_DM_AP() (in module ptypy.engines.utils) projection_update_generalized() (in module ptypy.engines.utils) propagator (ptypy.core.geometry.Geo property) prune_child() (ptypy.utils.descriptor.Descriptor method) psize (ptypy.core.classes.Storage property) (ptypy.core.classes.View property) (ptypy.core.geometry.Geo property) PtyAxis (class in ptypy.utils.plot_utils) ptycho (built-in variable) Ptycho (class in ptypy.core.ptycho) ptycho.data_type (built-in variable) ptycho.dry_run (built-in variable) ptycho.engines (built-in variable) ptycho.engines.engine_00 (built-in variable) ptycho.frames_per_block (built-in variable) ptycho.io (built-in variable) ptycho.io.autoplot (built-in variable) ptycho.io.autoplot.active (built-in variable) ptycho.io.autoplot.dump (built-in variable) ptycho.io.autoplot.imfile (built-in variable) ptycho.io.autoplot.interval (built-in variable) ptycho.io.autoplot.layout (built-in variable) ptycho.io.autoplot.make_movie (built-in variable) ptycho.io.autoplot.threaded (built-in variable) ptycho.io.autosave (built-in variable) ptycho.io.autosave.active (built-in variable) ptycho.io.autosave.interval (built-in variable) ptycho.io.autosave.rfile (built-in variable) ptycho.io.benchmark (built-in variable) ptycho.io.home (built-in variable) ptycho.io.interaction (built-in variable) ptycho.io.interaction.active (built-in variable) ptycho.io.interaction.client (built-in variable) ptycho.io.interaction.server (built-in variable) ptycho.io.rfile (built-in variable) ptycho.io.rformat (built-in variable) ptycho.ipython_kernel (built-in variable) ptycho.min_frames_for_recon (built-in variable) ptycho.run (built-in variable) ptycho.scans (built-in variable) ptycho.scans.scan_00 (built-in variable) ptycho.verbose_level (built-in variable) PTYD (in module ptypy.core.data) PtydScan (class in ptypy.core.data) (class in ptypy.experiment) ptypy module ptypy.core module ptypy.core.classes module ptypy.core.data module ptypy.core.geometry module ptypy.core.illumination module

ptypy.core.manager module ptypy.core.paths module ptypy.core.ptycho module ptypy.core.sample module ptypy.core.save_load module ptypy.core.xy module ptypy.debug module ptypy.debug.embedded_shell module ptypy.debug.ipython_kernel module ptypy.engines module ptypy.engines.base module ptypy.engines.ML module ptypy.engines.projectional module ptypy.engines.stochastic module ptypy.engines.utils module ptypy.experiment module ptypy.experiment.hdf5_loader module ptypy.experiment.ID16Anfp module ptypy.experiment.optiklabor module ptypy.experiment.plugin module ptypy.experiment.spec module ptypy.io module ptypy.io.edfIO module ptypy.io.h5rw module ptypy.io.image_read module ptypy.io.imageIO module ptypy.io.interaction module ptypy.io.json_rw module ptypy.io.rawIO module ptypy.resources module ptypy.simulations module ptypy.simulations.detector module ptypy.simulations.ptysim_utils module ptypy.simulations.simscan module ptypy.utils module ptypy.utils.array_utils module ptypy.utils.descriptor module ptypy.utils.math_utils module ptypy.utils.misc module ptypy.utils.parallel module ptypy.utils.parameters module ptypy.utils.plot_client module ptypy.utils.plot_utils module ptypy.utils.scripts module ptypy.utils.verbose module PtyScan (class in ptypy.core.data) (class in ptypy.experiment) pull_records() (ptypy.utils.misc.Table method)

Q

QuickScan (class in ptypy.experiment)

R

RAAR (class in ptypy.engines.projectional) radial_distribution() (in module ptypy.utils.scripts) rank_of (ptypy.utils.parallel.LoadManager attribute) raster_scan() (in module ptypy.core.xy) rawread() (in module ptypy.io.rawIO) rebin() (in module ptypy.utils.array_utils) rebin_2d() (in module ptypy.utils.array_utils) receive() (in module ptypy.utils.parallel) recon_file() (ptypy.core.paths.Paths method) rectangle() (in module ptypy.utils.array_utils) reduce_dimension() (in module ptypy.engines.utils) reformat() (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) register() (in module ptypy.engines) (ptypy.io.interaction.Server method) remove_hot_pixels() (in module ptypy.utils.scripts)

report() (in module ptypy.utils.verbose) (ptypy.core.classes.Container method) (ptypy.core.classes.Storage method) (ptypy.core.data.PtyScan method) (ptypy.experiment.PtyScan method) reset() (ptypy.utils.parallel.LoadManager method) resolution (ptypy.core.geometry.Geo property) restore_state() (ptypy.core.ptycho.Ptycho method) rgb2complex() (in module ptypy.utils.plot_utils) rgb2hsv() (in module ptypy.utils.plot_utils) rl_deconvolution() (in module ptypy.utils.math_utils) rmphaseramp() (in module ptypy.utils.plot_utils) root (ptypy.utils.descriptor.Descriptor property) round_scan() (in module ptypy.core.xy) run() (ptypy.core.paths.Paths method) (ptypy.core.ptycho.Ptycho method) (ptypy.debug.ipython_kernel.IPythonKernelThread method)

S

S (ptypy.core.classes.Container property) sanity_check() (ptypy.utils.descriptor.EvalDescriptor method) save() (ptypy.utils.plot_client.MPLplotter method) save_conf_parser() (ptypy.utils.descriptor.Descriptor method) save_csv() (ptypy.utils.descriptor.Descriptor method) save_json() (ptypy.utils.descriptor.Descriptor method) save_run() (ptypy.core.ptycho.Ptycho method) scan (built-in variable) scan.BlockFull (built-in variable) scan.BlockFull.coherence (built-in variable) scan.BlockFull.coherence.energies (built-in variable) scan.BlockFull.coherence.num_object_modes (built-in variable) scan.BlockFull.coherence.num_probe_modes (built-in variable) scan.BlockFull.coherence.object_dispersion (built-in variable) scan.BlockFull.coherence.probe_dispersion (built-in variable) scan.BlockFull.coherence.spectrum (built-in variable) scan.BlockFull.data (built-in variable) scan.BlockFull.data.name (built-in variable) scan.BlockFull.ffttype (built-in variable) scan.BlockFull.illumination (built-in variable) scan.BlockFull.illumination.aperture (built-in variable) scan.BlockFull.illumination.aperture.central_stop (built-in variable) scan.BlockFull.illumination.aperture.diffuser (built-in variable) scan.BlockFull.illumination.aperture.edge (built-in variable) scan.BlockFull.illumination.aperture.form (built-in variable) scan.BlockFull.illumination.aperture.offset (built-in variable) scan.BlockFull.illumination.aperture.rotate (built-in variable) scan.BlockFull.illumination.aperture.size (built-in variable) scan.BlockFull.illumination.diversity (built-in variable) scan.BlockFull.illumination.diversity.noise (built-in variable) scan.BlockFull.illumination.diversity.power (built-in variable) scan.BlockFull.illumination.diversity.shift (built-in variable) scan.BlockFull.illumination.model (built-in variable) scan.BlockFull.illumination.photons (built-in variable) scan.BlockFull.illumination.propagation (built-in variable) scan.BlockFull.illumination.propagation.antialiasing (built-in variable) scan.BlockFull.illumination.propagation.focussed (built-in variable) scan.BlockFull.illumination.propagation.parallel (built-in variable) scan.BlockFull.illumination.propagation.spot_size (built-in variable) scan.BlockFull.illumination.recon (built-in variable) scan.BlockFull.illumination.recon.label (built-in variable) scan.BlockFull.illumination.recon.rfile (built-in variable) scan.BlockFull.name (built-in variable) scan.BlockFull.propagation (built-in variable) scan.BlockFull.resample (built-in variable) scan.BlockFull.resolution (built-in variable) scan.BlockFull.sample (built-in variable) scan.BlockFull.sample.diversity (built-in variable) scan.BlockFull.sample.diversity.noise (built-in variable) scan.BlockFull.sample.diversity.power (built-in variable) scan.BlockFull.sample.diversity.shift (built-in variable) scan.BlockFull.sample.fill (built-in variable) scan.BlockFull.sample.model (built-in variable) scan.BlockFull.sample.process (built-in variable) scan.BlockFull.sample.process.density (built-in variable) scan.BlockFull.sample.process.formula (built-in variable) scan.BlockFull.sample.process.offset (built-in variable) scan.BlockFull.sample.process.ref_index (built-in variable) scan.BlockFull.sample.process.smoothing (built-in variable) scan.BlockFull.sample.process.thickness (built-in variable) scan.BlockFull.sample.process.zoom (built-in variable) scan.BlockFull.sample.recon (built-in variable) scan.BlockFull.sample.recon.rfile (built-in variable) scan.BlockFull.sample.stxm (built-in variable) scan.BlockFull.sample.stxm.label (built-in variable) scan.BlockFull.tags (built-in variable) scan.BlockGradFull (built-in variable) scan.BlockGradFull.coherence (built-in variable) scan.BlockGradFull.coherence.energies (built-in variable) scan.BlockGradFull.coherence.num_object_modes (built-in variable) scan.BlockGradFull.coherence.num_probe_modes (built-in variable) scan.BlockGradFull.coherence.object_dispersion (built-in variable) scan.BlockGradFull.coherence.probe_dispersion (built-in variable) scan.BlockGradFull.coherence.spectrum (built-in variable) scan.BlockGradFull.data (built-in variable) scan.BlockGradFull.data.name (built-in variable) scan.BlockGradFull.ffttype (built-in variable) scan.BlockGradFull.illumination (built-in variable) scan.BlockGradFull.name (built-in variable) scan.BlockGradFull.propagation (built-in variable) scan.BlockGradFull.resample (built-in variable) scan.BlockGradFull.resolution (built-in variable) scan.BlockGradFull.sample (built-in variable) scan.BlockGradFull.tags (built-in variable) scan.BlockOPRModel (built-in variable) scan.BlockOPRModel.coherence (built-in variable) scan.BlockOPRModel.coherence.energies (built-in variable) scan.BlockOPRModel.coherence.num_object_modes (built-in variable) scan.BlockOPRModel.coherence.num_probe_modes (built-in variable) scan.BlockOPRModel.coherence.object_dispersion (built-in variable) scan.BlockOPRModel.coherence.probe_dispersion (built-in variable) scan.BlockOPRModel.coherence.spectrum (built-in variable) scan.BlockOPRModel.data (built-in variable) scan.BlockOPRModel.data.name (built-in variable) scan.BlockOPRModel.ffttype (built-in variable) scan.BlockOPRModel.illumination (built-in variable) scan.BlockOPRModel.name (built-in variable) scan.BlockOPRModel.propagation (built-in variable) scan.BlockOPRModel.resample (built-in variable) scan.BlockOPRModel.resolution (built-in variable) scan.BlockOPRModel.sample (built-in variable) scan.BlockOPRModel.tags (built-in variable) scan.BlockScanModel (built-in variable) scan.BlockScanModel.data (built-in variable) scan.BlockScanModel.data.name (built-in variable) scan.BlockScanModel.ffttype (built-in variable) scan.BlockScanModel.illumination (built-in variable) scan.BlockScanModel.propagation (built-in variable) scan.BlockScanModel.resample (built-in variable) scan.BlockScanModel.sample (built-in variable) scan.BlockScanModel.tags (built-in variable) scan.BlockVanilla (built-in variable) scan.BlockVanilla.data (built-in variable) scan.BlockVanilla.data.name (built-in variable) scan.BlockVanilla.ffttype (built-in variable) scan.BlockVanilla.illumination (built-in variable) scan.BlockVanilla.illumination.size (built-in variable) scan.BlockVanilla.name (built-in variable) scan.BlockVanilla.propagation (built-in variable) scan.BlockVanilla.resample (built-in variable) scan.BlockVanilla.sample (built-in variable) scan.BlockVanilla.sample.fill (built-in variable) scan.BlockVanilla.tags (built-in variable) scan.Bragg3dModel (built-in variable) scan.Bragg3dModel.data (built-in variable) scan.Bragg3dModel.data.name (built-in variable) scan.Bragg3dModel.ffttype (built-in variable) scan.Bragg3dModel.illumination (built-in variable) scan.Bragg3dModel.illumination.aperture (built-in variable) scan.Bragg3dModel.illumination.aperture.central_stop (built-in variable) scan.Bragg3dModel.illumination.aperture.diffuser (built-in variable) scan.Bragg3dModel.illumination.aperture.edge (built-in variable) scan.Bragg3dModel.illumination.aperture.form (built-in variable) scan.Bragg3dModel.illumination.aperture.offset (built-in variable) scan.Bragg3dModel.illumination.aperture.rotate (built-in variable) scan.Bragg3dModel.illumination.aperture.size (built-in variable) scan.Bragg3dModel.illumination.model (built-in variable) scan.Bragg3dModel.illumination.photons (built-in variable) scan.Bragg3dModel.illumination.propagation (built-in variable) scan.Bragg3dModel.illumination.propagation.antialiasing (built-in variable) scan.Bragg3dModel.illumination.propagation.focussed (built-in variable) scan.Bragg3dModel.illumination.propagation.parallel (built-in variable) scan.Bragg3dModel.illumination.propagation.spot_size (built-in variable) scan.Bragg3dModel.illumination.recon (built-in variable) scan.Bragg3dModel.illumination.recon.label (built-in variable) scan.Bragg3dModel.illumination.recon.rfile (built-in variable) scan.Bragg3dModel.illumination.size (built-in variable) scan.Bragg3dModel.name (built-in variable) scan.Bragg3dModel.propagation (built-in variable) scan.Bragg3dModel.resample (built-in variable) scan.Bragg3dModel.sample (built-in variable) scan.Bragg3dModel.sample.fill (built-in variable) scan.Bragg3dModel.tags (built-in variable) scan.Full (built-in variable) scan.Full.coherence (built-in variable) scan.Full.coherence.energies (built-in variable) scan.Full.coherence.num_object_modes (built-in variable) scan.Full.coherence.num_probe_modes (built-in variable) scan.Full.coherence.object_dispersion (built-in variable) scan.Full.coherence.probe_dispersion (built-in variable) scan.Full.coherence.spectrum (built-in variable) scan.Full.data (built-in variable) scan.Full.data.name (built-in variable) scan.Full.ffttype (built-in variable) scan.Full.illumination (built-in variable) scan.Full.illumination.aperture (built-in variable) scan.Full.illumination.aperture.central_stop (built-in variable) scan.Full.illumination.aperture.diffuser (built-in variable) scan.Full.illumination.aperture.edge (built-in variable) scan.Full.illumination.aperture.form (built-in variable) scan.Full.illumination.aperture.offset (built-in variable) scan.Full.illumination.aperture.rotate (built-in variable) scan.Full.illumination.aperture.size (built-in variable) scan.Full.illumination.diversity (built-in variable) scan.Full.illumination.diversity.noise (built-in variable) scan.Full.illumination.diversity.power (built-in variable) scan.Full.illumination.diversity.shift (built-in variable) scan.Full.illumination.model (built-in variable) scan.Full.illumination.photons (built-in variable) scan.Full.illumination.propagation (built-in variable) scan.Full.illumination.propagation.antialiasing (built-in variable) scan.Full.illumination.propagation.focussed (built-in variable) scan.Full.illumination.propagation.parallel (built-in variable) scan.Full.illumination.propagation.spot_size (built-in variable) scan.Full.illumination.recon (built-in variable) scan.Full.illumination.recon.label (built-in variable) scan.Full.illumination.recon.rfile (built-in variable) scan.Full.name (built-in variable) scan.Full.propagation (built-in variable) scan.Full.resample (built-in variable) scan.Full.resolution (built-in variable) scan.Full.sample (built-in variable) scan.Full.sample.diversity (built-in variable) scan.Full.sample.diversity.noise (built-in variable) scan.Full.sample.diversity.power (built-in variable) scan.Full.sample.diversity.shift (built-in variable) scan.Full.sample.fill (built-in variable) scan.Full.sample.model (built-in variable) scan.Full.sample.process (built-in variable) scan.Full.sample.process.density (built-in variable) scan.Full.sample.process.formula (built-in variable) scan.Full.sample.process.offset (built-in variable) scan.Full.sample.process.ref_index (built-in variable) scan.Full.sample.process.smoothing (built-in variable) scan.Full.sample.process.thickness (built-in variable) scan.Full.sample.process.zoom (built-in variable) scan.Full.sample.recon (built-in variable) scan.Full.sample.recon.rfile (built-in variable) scan.Full.sample.stxm (built-in variable) scan.Full.sample.stxm.label (built-in variable) scan.Full.tags (built-in variable) scan.GradFull (built-in variable) scan.GradFull.coherence (built-in variable) scan.GradFull.coherence.energies (built-in variable) scan.GradFull.coherence.num_object_modes (built-in variable) scan.GradFull.coherence.num_probe_modes (built-in variable) scan.GradFull.coherence.object_dispersion (built-in variable) scan.GradFull.coherence.probe_dispersion (built-in variable) scan.GradFull.coherence.spectrum (built-in variable) scan.GradFull.data (built-in variable) scan.GradFull.data.name (built-in variable) scan.GradFull.ffttype (built-in variable) scan.GradFull.illumination (built-in variable) scan.GradFull.name (built-in variable) scan.GradFull.propagation (built-in variable) scan.GradFull.resample (built-in variable) scan.GradFull.resolution (built-in variable) scan.GradFull.sample (built-in variable) scan.GradFull.tags (built-in variable) scan.OPRModel (built-in variable) scan.OPRModel.coherence (built-in variable) scan.OPRModel.coherence.energies (built-in variable) scan.OPRModel.coherence.num_object_modes (built-in variable) scan.OPRModel.coherence.num_probe_modes (built-in variable) scan.OPRModel.coherence.object_dispersion (built-in variable) scan.OPRModel.coherence.probe_dispersion (built-in variable) scan.OPRModel.coherence.spectrum (built-in variable) scan.OPRModel.data (built-in variable) scan.OPRModel.data.name (built-in variable) scan.OPRModel.ffttype (built-in variable) scan.OPRModel.illumination (built-in variable) scan.OPRModel.name (built-in variable) scan.OPRModel.propagation (built-in variable) scan.OPRModel.resample (built-in variable) scan.OPRModel.resolution (built-in variable) scan.OPRModel.sample (built-in variable) scan.OPRModel.tags (built-in variable) scan.ScanModel (built-in variable)

scan.ScanModel.data (built-in variable) scan.ScanModel.data.name (built-in variable) scan.ScanModel.ffttype (built-in variable) scan.ScanModel.illumination (built-in variable) scan.ScanModel.propagation (built-in variable) scan.ScanModel.resample (built-in variable) scan.ScanModel.sample (built-in variable) scan.ScanModel.tags (built-in variable) scan.Vanilla (built-in variable) scan.Vanilla.data (built-in variable) scan.Vanilla.data.name (built-in variable) scan.Vanilla.ffttype (built-in variable) scan.Vanilla.illumination (built-in variable) scan.Vanilla.illumination.size (built-in variable) scan.Vanilla.name (built-in variable) scan.Vanilla.propagation (built-in variable) scan.Vanilla.resample (built-in variable) scan.Vanilla.sample (built-in variable) scan.Vanilla.sample.fill (built-in variable) scan.Vanilla.tags (built-in variable) scandata (built-in variable) scandata.MoonFlowerScan (built-in variable) scandata.MoonFlowerScan.add_poisson_noise (built-in variable) scandata.MoonFlowerScan.auto_center (built-in variable) scandata.MoonFlowerScan.block_wait_count (built-in variable) scandata.MoonFlowerScan.center (built-in variable) scandata.MoonFlowerScan.chunk_format (built-in variable) scandata.MoonFlowerScan.density (built-in variable) scandata.MoonFlowerScan.dfile (built-in variable) scandata.MoonFlowerScan.distance (built-in variable) scandata.MoonFlowerScan.energy (built-in variable) scandata.MoonFlowerScan.experimentID (built-in variable) scandata.MoonFlowerScan.label (built-in variable) scandata.MoonFlowerScan.load_parallel (built-in variable) scandata.MoonFlowerScan.min_frames (built-in variable) scandata.MoonFlowerScan.model (built-in variable) scandata.MoonFlowerScan.name (built-in variable) scandata.MoonFlowerScan.num_frames (built-in variable) scandata.MoonFlowerScan.orientation (built-in variable) scandata.MoonFlowerScan.photons (built-in variable) scandata.MoonFlowerScan.positions_theory (built-in variable) scandata.MoonFlowerScan.psf (built-in variable) scandata.MoonFlowerScan.psize (built-in variable) scandata.MoonFlowerScan.rebin (built-in variable) scandata.MoonFlowerScan.save (built-in variable) scandata.MoonFlowerScan.shape (built-in variable) scandata.MoonFlowerScan.version (built-in variable) scandata.PtydScan (built-in variable) scandata.PtydScan.add_poisson_noise (built-in variable) scandata.PtydScan.auto_center (built-in variable) scandata.PtydScan.center (built-in variable) scandata.PtydScan.chunk_format (built-in variable) scandata.PtydScan.dfile (built-in variable) scandata.PtydScan.distance (built-in variable) scandata.PtydScan.energy (built-in variable) scandata.PtydScan.experimentID (built-in variable) scandata.PtydScan.label (built-in variable) scandata.PtydScan.load_parallel (built-in variable) scandata.PtydScan.min_frames (built-in variable) scandata.PtydScan.name (built-in variable) scandata.PtydScan.num_frames (built-in variable) scandata.PtydScan.orientation (built-in variable) scandata.PtydScan.positions_theory (built-in variable) scandata.PtydScan.psize (built-in variable) scandata.PtydScan.rebin (built-in variable) scandata.PtydScan.save (built-in variable) scandata.PtydScan.shape (built-in variable) scandata.PtydScan.source (built-in variable) scandata.PtydScan.version (built-in variable) scandata.PtyScan (built-in variable) scandata.PtyScan.add_poisson_noise (built-in variable) scandata.PtyScan.auto_center (built-in variable) scandata.PtyScan.center (built-in variable) scandata.PtyScan.chunk_format (built-in variable) scandata.PtyScan.dfile (built-in variable) scandata.PtyScan.distance (built-in variable) scandata.PtyScan.energy (built-in variable) scandata.PtyScan.experimentID (built-in variable) scandata.PtyScan.label (built-in variable) scandata.PtyScan.load_parallel (built-in variable) scandata.PtyScan.min_frames (built-in variable) scandata.PtyScan.name (built-in variable) scandata.PtyScan.num_frames (built-in variable) scandata.PtyScan.orientation (built-in variable) scandata.PtyScan.positions_theory (built-in variable) scandata.PtyScan.psize (built-in variable) scandata.PtyScan.rebin (built-in variable) scandata.PtyScan.save (built-in variable) scandata.PtyScan.shape (built-in variable) scandata.PtyScan.version (built-in variable) scandata.QuickScan (built-in variable) scandata.QuickScan.add_poisson_noise (built-in variable) scandata.QuickScan.auto_center (built-in variable) scandata.QuickScan.center (built-in variable) scandata.QuickScan.chunk_format (built-in variable) scandata.QuickScan.density (built-in variable) scandata.QuickScan.dfile (built-in variable) scandata.QuickScan.distance (built-in variable) scandata.QuickScan.energy (built-in variable) scandata.QuickScan.experimentID (built-in variable) scandata.QuickScan.label (built-in variable) scandata.QuickScan.load_parallel (built-in variable) scandata.QuickScan.min_frames (built-in variable) scandata.QuickScan.name (built-in variable) scandata.QuickScan.num_frames (built-in variable) scandata.QuickScan.orientation (built-in variable) scandata.QuickScan.positions_theory (built-in variable) scandata.QuickScan.psize (built-in variable) scandata.QuickScan.rebin (built-in variable) scandata.QuickScan.save (built-in variable) scandata.QuickScan.shape (built-in variable) scandata.QuickScan.version (built-in variable) scandata.SimScan (built-in variable) scandata.SimScan.add_poisson_noise (built-in variable) scandata.SimScan.auto_center (built-in variable) scandata.SimScan.center (built-in variable) scandata.SimScan.chunk_format (built-in variable) scandata.SimScan.detector (built-in variable) scandata.SimScan.dfile (built-in variable) scandata.SimScan.distance (built-in variable) scandata.SimScan.energy (built-in variable) scandata.SimScan.experimentID (built-in variable) scandata.SimScan.frame_size (built-in variable) scandata.SimScan.illumination (built-in variable) scandata.SimScan.illumination.aperture (built-in variable) scandata.SimScan.illumination.aperture.central_stop (built-in variable) scandata.SimScan.illumination.aperture.diffuser (built-in variable) scandata.SimScan.illumination.aperture.edge (built-in variable) scandata.SimScan.illumination.aperture.form (built-in variable) scandata.SimScan.illumination.aperture.offset (built-in variable) scandata.SimScan.illumination.aperture.rotate (built-in variable) scandata.SimScan.illumination.aperture.size (built-in variable) scandata.SimScan.illumination.diversity (built-in variable) scandata.SimScan.illumination.diversity.noise (built-in variable) scandata.SimScan.illumination.diversity.power (built-in variable) scandata.SimScan.illumination.diversity.shift (built-in variable) scandata.SimScan.illumination.model (built-in variable) scandata.SimScan.illumination.photons (built-in variable) scandata.SimScan.illumination.propagation (built-in variable) scandata.SimScan.illumination.propagation.antialiasing (built-in variable) scandata.SimScan.illumination.propagation.focussed (built-in variable) scandata.SimScan.illumination.propagation.parallel (built-in variable) scandata.SimScan.illumination.propagation.spot_size (built-in variable) scandata.SimScan.illumination.recon (built-in variable) scandata.SimScan.illumination.recon.label (built-in variable) scandata.SimScan.illumination.recon.rfile (built-in variable) scandata.SimScan.label (built-in variable) scandata.SimScan.load_parallel (built-in variable) scandata.SimScan.min_frames (built-in variable) scandata.SimScan.name (built-in variable) scandata.SimScan.num_frames (built-in variable) scandata.SimScan.orientation (built-in variable) scandata.SimScan.plot (built-in variable) scandata.SimScan.pos_drift (built-in variable) scandata.SimScan.pos_noise (built-in variable) scandata.SimScan.pos_scale (built-in variable) scandata.SimScan.positions_theory (built-in variable) scandata.SimScan.propagation (built-in variable) scandata.SimScan.psf (built-in variable) scandata.SimScan.psize (built-in variable) scandata.SimScan.rebin (built-in variable) scandata.SimScan.sample (built-in variable) scandata.SimScan.sample.diversity (built-in variable) scandata.SimScan.sample.diversity.noise (built-in variable) scandata.SimScan.sample.diversity.power (built-in variable) scandata.SimScan.sample.diversity.shift (built-in variable) scandata.SimScan.sample.fill (built-in variable) scandata.SimScan.sample.model (built-in variable) scandata.SimScan.sample.process (built-in variable) scandata.SimScan.sample.process.density (built-in variable) scandata.SimScan.sample.process.formula (built-in variable) scandata.SimScan.sample.process.offset (built-in variable) scandata.SimScan.sample.process.ref_index (built-in variable) scandata.SimScan.sample.process.smoothing (built-in variable) scandata.SimScan.sample.process.thickness (built-in variable) scandata.SimScan.sample.process.zoom (built-in variable) scandata.SimScan.sample.recon (built-in variable) scandata.SimScan.sample.recon.rfile (built-in variable) scandata.SimScan.sample.stxm (built-in variable) scandata.SimScan.sample.stxm.label (built-in variable) scandata.SimScan.save (built-in variable) scandata.SimScan.shape (built-in variable) scandata.SimScan.verbose_level (built-in variable) scandata.SimScan.version (built-in variable) scandata.SimScan.xy (built-in variable) scandata.SimScan.xy.count (built-in variable) scandata.SimScan.xy.extent (built-in variable) scandata.SimScan.xy.jitter (built-in variable) scandata.SimScan.xy.model (built-in variable) scandata.SimScan.xy.offset (built-in variable) scandata.SimScan.xy.override (built-in variable) scandata.SimScan.xy.spacing (built-in variable) scandata.SimScan.xy.steps (built-in variable) ScanModel (class in ptypy.core.manager) SDR (class in ptypy.engines.stochastic) select_func() (ptypy.utils.misc.Table method) select_match() (ptypy.utils.misc.Table method) select_range() (ptypy.utils.misc.Table method) send() (in module ptypy.utils.parallel) send_error() (ptypy.io.interaction.Server method) send_warning() (ptypy.io.interaction.Server method) Server (class in ptypy.io.interaction) set() (ptypy.io.interaction.Client method) set_channel() (ptypy.utils.plot_utils.PtyAxis method) set_clims() (ptypy.utils.plot_utils.PtyAxis method) set_cmap() (ptypy.utils.plot_utils.PtyAxis method) set_data() (ptypy.utils.plot_utils.PtyAxis method) set_level() (in module ptypy.utils.verbose) set_mask() (ptypy.utils.plot_utils.PtyAxis method) set_psize() (ptypy.utils.plot_utils.PtyAxis method) shape (ptypy.core.classes.View property) (ptypy.core.geometry.Geo property) shift_zoom() (in module ptypy.utils.array_utils) shot() (in module ptypy.simulations.detector) SimScan (class in ptypy.experiment) (class in ptypy.simulations.simscan) simulate() (in module ptypy.core.sample) size (ptypy.core.classes.Container property) slice (ptypy.core.classes.View property) smooth_step() (in module ptypy.utils.math_utils) Sp (ptypy.core.classes.Container property) sp (ptypy.core.classes.View property) spawn_MPLClient() (in module ptypy.utils.plot_client) SpecInfo (class in ptypy.experiment.spec) SpecScan (class in ptypy.experiment.spec) spiral_scan() (in module ptypy.core.xy) start() (ptypy.utils.plot_client.PlotClient method) start_ipython_kernel() (in module ptypy.debug.ipython_kernel) status (ptypy.utils.plot_client.PlotClient property) stop() (ptypy.io.interaction.Client method) (ptypy.io.interaction.Server method) (ptypy.utils.plot_client.PlotClient method) stop_server() (ptypy.io.interaction.Client method) STOPPED (ptypy.utils.plot_client.PlotClient attribute) Storage (class in ptypy.core.classes) storage (ptypy.core.classes.View attribute) storageID (ptypy.core.classes.View attribute) storages (ptypy.core.classes.Container property) str2int() (in module ptypy.utils.misc) str2range() (in module ptypy.utils.misc) stxm_analysis() (in module ptypy.utils.scripts) stxm_init() (in module ptypy.utils.scripts) subtract_dark() (ptypy.experiment.hdf5_loader.Hdf5Loader method) (ptypy.experiment.hdf5_loader.Hdf5LoaderFast static method) (ptypy.experiment.Hdf5Loader method) (ptypy.experiment.Hdf5LoaderFast static method) support_constraint() (ptypy.engines.base.BaseEngine method) SUPPORTED_MODELS (ptypy.engines.ML.ML attribute) switch_orientation() (in module ptypy.utils.array_utils)

T

Table (class in ptypy.utils.misc) to_h5() (in module ptypy.core.save_load)

to_string() (ptypy.utils.descriptor.Descriptor method) tree_obj() (in module ptypy.resources) type (ptypy.utils.descriptor.EvalDescriptor property)

U

undistort() (in module ptypy.experiment.ID16Anfp) unexpected_ticket() (ptypy.io.interaction.Client method) unique_path() (in module ptypy.utils.misc) unlink() (in module ptypy.core.save_load) update() (ptypy.core.classes.Storage method) (ptypy.core.geometry.BasicFarfieldPropagator method) (ptypy.core.geometry.BasicNearfieldPropagator method) (ptypy.core.geometry.Geo method) (ptypy.utils.parameters.Param method)

update_plot_layout() (ptypy.utils.plot_client.MPLplotter method) update_views() (ptypy.core.classes.Storage method) upsample (ptypy.core.classes.POD property) upsample() (ptypy.core.geometry.Geo method) userlevel (ptypy.utils.descriptor.EvalDescriptor property)

V

V (ptypy.core.classes.Container property) validate() (ptypy.utils.descriptor.EvalDescriptor method) Vanilla (class in ptypy.core.manager) verbose() (in module ptypy.experiment.spec)

View (class in ptypy.core.classes) views (ptypy.core.classes.Container property) (ptypy.core.classes.Storage property) views_in_storage() (ptypy.core.classes.Container method) Vp (ptypy.core.classes.Container property)

W

WAIT (ptypy.core.data.PtyScan attribute) (ptypy.experiment.PtyScan attribute)

wait() (ptypy.io.interaction.Client method)

X

xradia_star() (in module ptypy.utils.scripts)

Z

zoom() (in module ptypy.utils.array_utils)

zoom_to_psize() (ptypy.core.classes.Storage method)